Browse of TCMCG046C29892 protein

CDS

Accession Number	TCMCG046C29892
gbkey	CDS
Protein Id	XP_008807938.2
Location	complement(join(246239..246876,248537..248908,249006..250095,250552..250844,251406..251484,251622..251709,251826..251961,252048..252309,254667..256016,256931..257200,259014..259275,267117..267203,267280..267539,267541..267616,267839..267917,270373..270455,270559..270636,273458..273541,273628..273715,273859..273945,274027..274166,274259..274332,276350..276373))
Gene	LOC103720139
GeneID	103720139
Organism	Phoenix dactylifera

Protein

Length	1999aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA249070
db_source	XM_008809716.3
Definition	LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13 [Phoenix dactylifera]

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACGAATGTGTTCAGAATTGGAGAGCTTCAAACAATTTCATGGTTTCAGTTTCTCCCTTGTGATTCTGATCCAAACTCTCTACCTGAGAAAAGTTTAAAGGCAGAGCAGAAAGATGCTGCTACTCATCTGATTCTTTCAGCTCATCTACAGCTACAAAATGAAGGCTTTCTCAGCACATGGACTAACTCCTTTTTTGGTCCATGGGACCCATCTCAGGGAGTGCACAACCCTGATGAGAAAATCAAGCTCTGGCTTTTTCTTCGCGGTCGTCACTCGTCAATAATTGATACTGCTCAATCTGCAGTATCCAGATTGAGAGTTGTGGGAAGTGGGCTGTGGCTGGCACCTGGTGATTCAGAAGAGGTTGCTCTTGCATTATCTCAGGCTTTAAGAAATTATATAGAAAGAGCACTTAGAGGGTTTTCGTACGTGAGATTTGGAGATGTTTTCACAAGATGTCATCCTTTCACACCAAATGAAAAAAGCTTTAGGAGAGCACAGCCAACATTTGAGTTCATCTTTTCTGCCACGGAAGAAGCAATCTATGTGCATGCAATAATATCCGCAAAGCATATCCGGGGACTGTGCGGTGATGATATAGAAAGAATATCAAGGAATGGTTCCTCTCGTTCCACTCGTGAAGGGCTCCCAGTTATTGTTGGTCCTAATGGAATGCGAGGTAGGCTTACTGGATGTTGTCCCAGTGATCTTGTGAAGCAAGTATATATCAGCAACTCAAAGGTGTCAAATGGGTTTACAGTTGGTGTGCGTTTTCCTGTTGCTCAATCTTCTGGCTGCCAGTTGAGGGGTCAAAGTTGCTATGTTGAAGTCACCCTTGGCTGCCCTTCCACTTGTAGTGATAAAGTTTTGGAATCAAATAGTAATCAAAGCAACAATGCCATTCGTCCTCATACCGAAGAGTCTCATTTTTCATCTGTTGGAAAAGGCCAGCAGAAGCAGGGAACAATTTATCAGCTTCCAATTCTTGAAAGAACATTCATTTACCCAGCAGATGCTGTGGTAATTCCTATGATGCACAGAGCCTTTGCTCGATCTTCTGTCAAGAGATTCTGGCTGCAAAATTGGGTCGGAACATCAGTACTTGAGATGTGGCCAATATGGAATTTTTTGGGATCCTCTCGTATTGAGCACTGTTTTGCATTTGGAAACACTTGTTGTAGTGGGCCCTTGGATGGACTTGGAGGTGAGTTTAGTGGTATGAGACTGCAAAAACAATATAATAGCAGCAGTAACAGCATAACTAGTAGCATCAGCAGTGTGAGCAGTACATCCAGCGATAGTGAATATGCAGTGGCTGCTGGAGCTGGTGATCTTGAAGCCGATGCTGACTCTCTTACATGTAGACATTCTGGTTTGTCTTCCAATGATCAGTTTGAGAATGATGGTCGCAAAATGGTCTCCAAACGTGCACGCACTGGCACAACAGAAACAACTGGTCAAGCAGGCACCGTTGTAAGTGCAACTATCCAGGATGCTTATAATACTGAATATAGTGTTGCTGAAGCAAACAATTCAGCCGCTGCAGGAGCAGCAAATATCCAGGTTGGATCTCGTTGGGATTGGGATGATGATGACCGAGGCGTTGGCATGGACATCCAAGCACTCATCTCTGAGTTTGGAGATTTTGGTGACTTTTTTGAAAATGATGTCCTGGCTTTTGGTGAGCCCCCAGGTACTGCAGAGTCGCAAGCTTTTATTTTTCCAGCTTCAGATTGTGGGGATATCAGTGGTAGCCCTATGGGAGGAATGGAAGTGTCACATCAGAAACTCTCTCCTGTTGGTCTTGCATCTTTTGAGGGAATTAACCCCCAATCCACTGCACTTACAGAGGATACTAGAAACCATAGTGCAGAATTTACTAAGGATGCTAGGTCATCTGTTTTAGGAACCCATTCTTCAACACCCTCAACAGGGAAGTTTGACTATCTGACAAAAGCTGAAGCCATGATGACATTTGCCCCAGAATATGCAGCAGTTGAGATGCCTGCTAGCGAGCTTCCAACATCAATTTTTAAAAGCCCATACTTGCCTAGATCTAGAAAGGTTGAGAGTTCACATTCTAGCTCTGTTGCTTATGTATATAATGCAGCACCACCTTCTCCTCGAATGATGACATTAGAAGAAAAGCCTGAGGTGTCAGCTAAACTCAAACTGGGTTCCATGGGGCATGGTGGGAATTTGTCTTTTCAATCTTCAAAATTTTACACGCATGTACAGAGTGGGACAAAAAAGACTAACAAGAGATCCGTTAATGATGACGTCTCTTCACGTGAAGGAGACGTTTCATTCTGTTTATCCAGCATAAGTTCCTTAACTACTGTCCCTACTCTCCAAAGGAAGAACCAAAACATGTTGGAGACAGCACATTTTCTGCTGTCTCTGAAGACTGTGCTTGCTACAGAACTTGAATGCACCATGTTCCAAGCTGCCATGTGTCGGATAAGACATACATTATTATCTCTTAGCAATAAAGTTCCTATTGGGTTGAGAAGTACTATATCAGATCTAGTACAAAGTGACACAAGCACCAAATCCGACATTATGACTGGTAAATACGAGATAAAGAAGAAAGATAACATACCAGTCAGAATAGCTGGTGATAGTGATGGAGGAATGCATGACGGGCCTGTTACTGCACAAGTGGGTGTTTGGCGCTCGGTTGGAGCTCCTAAAGGAACAAAGTCTTCAATTACACGCAATTCTGAAAATTCTTCTTCTTTGCTACTCAGTACATTGCATGACGAGAATTTAAATGTCTATGGGCAAAGGCAACCTCTTCAGGATCTTCTTGATGCTATGGCCTTGTTAGTCCAGCAATCTACTTCCTTCGTTGATGTCTCACTTGATTCAGATGATGGTGATGGTTCATATTGTTGGCTTGCACTACAAGAGCAGCGGAGGCGTGGATTTTCTTGTGGTCCATCTATGGTTCATGCAGGTTGTGGTGGACTTCTAGCCACATGCCATTCTGTGGATATTGCTGGCATTGACTTAATTGATCCACTTTCTGCTGATATTCAAGCATCATCTGTGATTAGTTTGCTGCAATCAGATATAAAATTAGCCTTAAAATCTGCTTTCGGAATTTTGGATGGTCCACTATCTGCGATCGATTGGTGCAGGGGTCGTGGCCAATCAGGTGATTCGAAAGCCACAGGAGATGGATATTCTTTTCAGTGCACTGTAAGTGAAGCTAAAGATTCTTCAAGCACTGTAACCCTGGCTGGAGAGCCAATTAGCCCACCTCAGTCTACTGGCGGTTCATCTTGCATCAGAGAGGGAGCAAGAATTGATGAGTCATCTCAAAGGAGATCAAGCCAAGAGATATGCAATTCAGAGTCAGAACAACAAAAAGGCTATTGTCGTTTCAGGCCAATACTTACAATTCTCCCATTACCTGCTATACGTGTTGGGTATCAGGATGATTGGCTGGATATGCCAGCAAAGAATCTACAATTTTGGGAAAAGGGTCCTCTTGAACCTTATGCTTCACCGAAGCCAATTATTTTCTATGCTTTATGTCCAGATATTGATCTCCTTTCATCTGCTGCTGCCGATTTTTTTCAACAGTTAGGAACCATTTATGAAGCATGCAAGCTGGGAACACATTCACCTCAAATAGGTGGACAGATGGACCCATCCTCGGCAAAATGTTTACCTTCTGGCCTTGTCCTTCTTGATTGCCCTCAACAAGTGAAGATCGCCAGCAATCATATTACTGCTATCAGCTCAATACGTGATTATTTTTTGGCCCTTTCCAAAGGTTGGAATGTGAAGAACTTCGTTAAGTCTCTTACAAAGGTTATCAAGGAATTGAAACTTGCTCCAAATTTGTCAGTAAATCAAAAAGAAGGAAGTAGTGGGCCTTGTACGGTAGTTTATGTCGTATGCCCCTTCCCTGAACCCAGGGCTGTTCTGCAAACACTGATTGAGTGCGCCAGTGCTCTTGGATCAGTGGTTCTGTCACCAGACAAAGAAAGACGATCTCTATTACATTCTCATGTTGCTAGGGCCTTAAACTGTACTGCCGCTGCAGATGAAGCATCAGCATCAAATGTTGTAATGCTCTCAGGGTTCAGTATTCCTAAGCTTGTTCTGCAGATTGTAACTGTGGAATCTTTGCTAGGAATCAATAGGCCAGTTAATGAGCTCGCTATTTTGAAGGACATTGCATTCACTGTATACAATAAGGCTCGACGAATCCCGTGGGCTGCTCCTGCCTCTGACGTGCTTCAGTCATCAGCTGCCTCAGGGAGATCTCAATCCACATTGATGCATGTAACTTCTCCTATTCCAGGCCTGTGGAAGGACTGTCATGCTCCTCGGTTATCTGGACCAACTCTTACAAGAGAGGCTGAACTTGATTCTGCCTTGAGACCTGGCACTTGGGATAACTCATGGCAACCATCAAGGGGTGCAGGGTTAACTTGCGAGCCAATTAGACCAGTAGACTTGTGTGGTCAGGATGATACTAGGTACATGTTTGAACCACTTTTTATATTGGCAGAACCCAGCTCGGTAGAGCATGGAACCCCTTCCACTGTGTTTGGGAGTGCAGTGTCAGAGACTTCAAGTTTAAAATCTGTTATTGATGACAGTGGCATGTACATGCAAAGTTCAACATCTGGAACGAATGCAGATATTGGAACAACCTCCCTGCTTGATGGATCGGAGCATGACTCTAAAACAGCAAGCCTTCATTGTTGTTATGGGTGGACTGAGGATTGGCGCTGGCTAGTCTGCATCTGGACAGACTCTAGAGGAGAGTTGCTTGACAGCTACATATTTCCCTTTGGTGGCATCAGTAGCCGCCAAGACACGAAGGTTCTCCAAAGCCTTTTTGTTCAGATTCTGCAACAGGGCTGTCAAATATTATCATGTCCATCCACTGATTCTTCTACTGCCAGGCCAAGGGACATAATAATCACACGTTTTGGATGTTTCTTTGAGCTTGAATGTCAAGAATGGCAGAAAGCTATCTACTCAGTTGGCGGTAATGAAGTGAAGAAATGGCCTTTACAACTACGGCGGTCTATGCCTGATGGCATTCCCTCAACAACTAATGGGACTTCTCTGCAGCAGCAGGAATTGGGTTTAATTCAAGACAGAAACCTACTTTCCTCACCTGGCCCTTCGTTGTACAGCCCTCATTCCAAGTCCAGCTTTATTAAAGGTGGTCTGGCTCAATCTAGCACCAAAAAACAGCTCTTAGCAGGACAGACAGGTGTGGACAGCGCAAGGGGGTTATTGCAATTGGTGCAGAGCATCAGTTTAATTGGAGTTTCTATTGATCATACGTTGCATTTAATCCTTCAACCAGATGCATCTTCTGCCGGTGGAGGATCTCAGAGCACCAGCAGCTCAAGCCTTTCAGGCTACTTGGAAGGATTCACACCAGTGAAGTCTCTAGGGTCTATGCAGGAATCTCTTCTCCTAATCCCCTCGCCCAGTTTGCGCTACCTACCTTCAACACCCTTGCAACTTCCCACTTGCCTGACTTCGGAGTCTCCGCCCCTTGCCCATCTCTTGCATAGCAAAGGGTCTGCAGTTCCCCTGGCCACTGGATACGTCGTTTCCAAAGCAGTCCCAACCATGAGAAAAGACCCAACAGAATTGACAAAGGAAGATTGGCCTTCTATTCTTGCAGTCAGCCTCGTTGATCACTACGGACGCAACAATAACAGCATCCAAGAAAAGATGGTCCGAGGTGCTGGTAACATCACTGTTGGTAAGCAAGGTAGGAGTCTGAATCCGGAGGCCATCAATAGGGACTGTGAGATGGAGACGCATCTGGTTTTAGAGTCTGTAGCGGCTGAGCTTCACTCTCTTTCTTGGATGACTGCAAGTCCGGTGTATCTTGAAAGGCGCACTGCACTACCTTTTCACTGTGAAATGCTTCTAAGACTAAGAAGGCTACTGCACTATGCGGATAAAGAGTTTTCTCGGCCACCAGAAAAGGCACATCAAACTTAG

Protein:   MWTNVFRIGELQTISWFQFLPCDSDPNSLPEKSLKAEQKDAATHLILSAHLQLQNEGFLSTWTNSFFGPWDPSQGVHNPDEKIKLWLFLRGRHSSIIDTAQSAVSRLRVVGSGLWLAPGDSEEVALALSQALRNYIERALRGFSYVRFGDVFTRCHPFTPNEKSFRRAQPTFEFIFSATEEAIYVHAIISAKHIRGLCGDDIERISRNGSSRSTREGLPVIVGPNGMRGRLTGCCPSDLVKQVYISNSKVSNGFTVGVRFPVAQSSGCQLRGQSCYVEVTLGCPSTCSDKVLESNSNQSNNAIRPHTEESHFSSVGKGQQKQGTIYQLPILERTFIYPADAVVIPMMHRAFARSSVKRFWLQNWVGTSVLEMWPIWNFLGSSRIEHCFAFGNTCCSGPLDGLGGEFSGMRLQKQYNSSSNSITSSISSVSSTSSDSEYAVAAGAGDLEADADSLTCRHSGLSSNDQFENDGRKMVSKRARTGTTETTGQAGTVVSATIQDAYNTEYSVAEANNSAAAGAANIQVGSRWDWDDDDRGVGMDIQALISEFGDFGDFFENDVLAFGEPPGTAESQAFIFPASDCGDISGSPMGGMEVSHQKLSPVGLASFEGINPQSTALTEDTRNHSAEFTKDARSSVLGTHSSTPSTGKFDYLTKAEAMMTFAPEYAAVEMPASELPTSIFKSPYLPRSRKVESSHSSSVAYVYNAAPPSPRMMTLEEKPEVSAKLKLGSMGHGGNLSFQSSKFYTHVQSGTKKTNKRSVNDDVSSREGDVSFCLSSISSLTTVPTLQRKNQNMLETAHFLLSLKTVLATELECTMFQAAMCRIRHTLLSLSNKVPIGLRSTISDLVQSDTSTKSDIMTGKYEIKKKDNIPVRIAGDSDGGMHDGPVTAQVGVWRSVGAPKGTKSSITRNSENSSSLLLSTLHDENLNVYGQRQPLQDLLDAMALLVQQSTSFVDVSLDSDDGDGSYCWLALQEQRRRGFSCGPSMVHAGCGGLLATCHSVDIAGIDLIDPLSADIQASSVISLLQSDIKLALKSAFGILDGPLSAIDWCRGRGQSGDSKATGDGYSFQCTVSEAKDSSSTVTLAGEPISPPQSTGGSSCIREGARIDESSQRRSSQEICNSESEQQKGYCRFRPILTILPLPAIRVGYQDDWLDMPAKNLQFWEKGPLEPYASPKPIIFYALCPDIDLLSSAAADFFQQLGTIYEACKLGTHSPQIGGQMDPSSAKCLPSGLVLLDCPQQVKIASNHITAISSIRDYFLALSKGWNVKNFVKSLTKVIKELKLAPNLSVNQKEGSSGPCTVVYVVCPFPEPRAVLQTLIECASALGSVVLSPDKERRSLLHSHVARALNCTAAADEASASNVVMLSGFSIPKLVLQIVTVESLLGINRPVNELAILKDIAFTVYNKARRIPWAAPASDVLQSSAASGRSQSTLMHVTSPIPGLWKDCHAPRLSGPTLTREAELDSALRPGTWDNSWQPSRGAGLTCEPIRPVDLCGQDDTRYMFEPLFILAEPSSVEHGTPSTVFGSAVSETSSLKSVIDDSGMYMQSSTSGTNADIGTTSLLDGSEHDSKTASLHCCYGWTEDWRWLVCIWTDSRGELLDSYIFPFGGISSRQDTKVLQSLFVQILQQGCQILSCPSTDSSTARPRDIIITRFGCFFELECQEWQKAIYSVGGNEVKKWPLQLRRSMPDGIPSTTNGTSLQQQELGLIQDRNLLSSPGPSLYSPHSKSSFIKGGLAQSSTKKQLLAGQTGVDSARGLLQLVQSISLIGVSIDHTLHLILQPDASSAGGGSQSTSSSSLSGYLEGFTPVKSLGSMQESLLLIPSPSLRYLPSTPLQLPTCLTSESPPLAHLLHSKGSAVPLATGYVVSKAVPTMRKDPTELTKEDWPSILAVSLVDHYGRNNNSIQEKMVRGAGNITVGKQGRSLNPEAINRDCEMETHLVLESVAAELHSLSWMTASPVYLERRTALPFHCEMLLRLRRLLHYADKEFSRPPEKAHQT